dynamo.pl.highest_frac_genes
- dynamo.pl.highest_frac_genes(adata, n_top=30, gene_prefix_list=None, show_individual_prefix_gene=False, show=True, save_path=None, ax=None, gene_annotations=None, gene_annotation_key='use_for_pca', log=False, store_key='highest_frac_genes', orient='v', figsize=None, layer=None, title=None, v_rotation=35, **kwargs)[source]
[summary]
- Parameters
adata (AnnData) – [description]
n_top (int, optional) – [description], by default 30
gene_prefix_list (list, optional) – A list of gene name prefix, by default None
show_individual_prefix_gene (bool, optional) – [description], by default False
show (Optional[bool], optional) – [description], by default True
save_path (str, optional) – [description], by default None
ax (Optional[Axes], optional) – [description], by default None
gene_annotations (Optional[list], optional) – Annotations for genes, or annotations for gene prefix subsets, by default None
gene_annotation_key (str, optional) – gene annotations key in adata.var, by default “use_for_pca”. This option is not available for gene_prefix_list and thus users should pass gene_annotations argument for the prefix list.
log (bool, optional) – [description], by default False
store_key (str, optional) – [description], by default “expr_percent”
- Returns
[description]
- Return type
[type]