dynamo.sim.Simulator
- dynamo.sim.Simulator(motif='neurogenesis', seed_num=19491001, clip=True, cell_num=5000)[source]
Simulate the gene expression dynamics via deterministic ODE model
- Parameters
motif (str (default: neurogenesis)) – Name of the network motif that will be used in the simulation.
clip (bool (default: True)) – Whether to clip data points that are negative.
cell_num (int (default: 5000)) – Number of cells to simulate.
- Returns
adata – an Annodata object containing the simulated data.
- Return type