dynamo.vf.rank_expression_genes
- dynamo.vf.rank_expression_genes(adata, ekey='M_s', prefix_store='rank', **kwargs)[source]
Rank genes based on their expression values for each cell group.
- Parameters
adata (
AnnData) – AnnData object that contains the normalized or locally smoothed expression.ekey (str (default: 'M_s')) – The expression key, can be any properly normalized layers, e.g. M_s, M_u, M_t, M_n.
prefix_store (str (default: 'rank')) – The prefix added to the key for storing the returned in adata.
kwargs – Keyword arguments passed to vf.rank_genes.
- Returns
adata – AnnData object which has the rank dictionary for expression in .uns.
- Return type