dynamo.vf.rank_velocity_genes

dynamo.vf.rank_velocity_genes(adata, vkey='velocity_S', prefix_store='rank', **kwargs)[source]

Rank genes based on their raw and absolute velocities for each cell group.

Parameters

  • adata (AnnData) – AnnData object that contains the gene-wise velocities.

  • vkey (str (default: 'velocity_S')) – The velocity key.

  • prefix_store (str (default: 'rank')) – The prefix added to the key for storing the returned in adata.

  • kwargs – Keyword arguments passed to vf.rank_genes.

Returns

adata – AnnData object which has the rank dictionary for velocities in .uns.

Return type

AnnData